ICEberg
I. Information of ICE
ICEberg ID139
Name ICEVchVie0 This ICE is derived from experimental literature
FamilySXT/R391
OrganismVibrio cholerae O1 90
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
FunctionSulphametoxazol, chloramphenicol;trimethoprim, streptomycin and tetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceDQ499467 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVchVie0 is not available.



The graph information of ICEVchVie0 components from DQ499467
Incomplete gene list of ICEVchVie0 from DQ499467
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1tnp429..1025 [+], 597putative transposase
2tnpA1139..2752 [+], 1614truncated transposase
3s0212220..2942 [-], 723unknown
4rumA3372..3768 [-], 397UV repair protein
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins4Fasta
(1) Spagnoletti M; Ceccarelli D; Colombo MM (2012). Rapid detection by multiplex PCR of Genomic Islands, prophages and Integrative Conjugative Elements in V. cholerae 7th pandemic variants. J Microbiol Methods. 88(1):98-102. [PudMed:22062086] experimental
(2) Bani S; Mastromarino PN; Ceccarelli D; Le Van A; Salvia AM; Ngo Viet QT; Hai DH; Bacciu D; Cappuccinelli P; Colombo MM (2007). Molecular characterization of ICEVchVie0 and its disappearance in Vibrio cholerae O1 strains isolated in 2003 in Vietnam. FEMS Microbiol Lett. 266(1):42-8. [PudMed:17233716] experimental
 
experimental experimental literature