ICEberg
I. Information of ICE
ICEberg ID131
Name ICEDzeEch1591-1 This is a putative ICE identified in this study by Blast
FamilyICEKp1
OrganismDickeya zeae Ech1591
Size (bp)53865
GC content [Genome] (%)50.77[54.52]
Insertion sitetRNA-asn(Dd1591_R0046)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001655 (complete ICE sequence in this genome)
Replicon chromosome (4813854 bp, BioProject:31295) [NC_012912]
Genome coordinates1679168..1733032 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEDzeEch1591-1 is not available.



The graph information of ICEDzeEch1591-1 components from CP001655
Complete gene list of ICEDzeEch1591-1 from CP001655
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Dd1591_14631675457..1676608 [-], 1152conserved hypothetical protein
2Dd1591_14641676724..1677704 [-], 981aldo/keto reductase
3Dd1591_14661679539..1679700 [-], 162hypothetical protein
4Dd1591_14671679797..1685643 [-], 5847DEAD/DEAH box helicase domain protein
5Dd1591_14681685663..1687750 [-], 2088conserved hypothetical protein
6Dd1591_14691687763..1690324 [-], 2562conserved hypothetical protein
7Dd1591_14701690321..1691556 [-], 1236DNA-cytosine methyltransferase
8Dd1591_14711691841..1692863 [+], 1023conserved hypothetical protein
9Dd1591_14731693607..1694551 [+], 945domain of unknown function DUF1738
10Dd1591_14741694872..1695108 [+], 237Post-segregation antitoxin CcdA
11Dd1591_14751695111..1695425 [+], 315CcdB protein
12Dd1591_14761695443..1696174 [-], 732putative MobC protein
13Dd1591_14771696183..1698012 [-], 1830type IV conjugative transfer system coupling protein TraDVirD4, T4SS component 
14Dd1591_14781698683..1698985 [-], 303putative lipoprotein
15Dd1591_14791699026..1700042 [-], 1017Sigma 54 interacting domain proteinVirB11, T4SS component 
16Dd1591_14801700032..1701234 [-], 1203conjugation TrbI family proteinVirB10, T4SS component 
17Dd1591_14811701231..1702121 [-], 891P-type conjugative transfer protein VirB9VirB9, T4SS component 
18Dd1591_14821702121..1702804 [-], 684VirB8 family proteinVirB8, T4SS component 
19Dd1591_14831702797..1702937 [-], 141putative conjugal transfer proteinVirB7, T4SS component 
20Dd1591_14841703025..1704053 [-], 1029TrbL/VirB6 plasmid conjugal transfer proteinVirB6, T4SS component 
21Dd1591_14851704065..1704289 [-], 225conserved hypothetical protein; putative exported protein
22Dd1591_14861704300..1705016 [-], 717type IV secretion system family proteinVirB5, T4SS component 
23Dd1591_14871705041..1707788 [-], 2748CagE TrbE VirB component of type IV transporter systemVirB4, T4SS component 
24Dd1591_14881707798..1708073 [-], 276Conjugal transfer protein TrbCVirB2, T4SS component 
25Dd1591_14891708093..1708740 [-], 648Lytic transglycosylase catalyticVirB1, T4SS component 
26Dd1591_14901708810..1709043 [-], 234conserved hypothetical protein
27Dd1591_14911709363..1710400 [+], 1038hypothetical protein
28Dd1591_14921710394..1712670 [+], 2277helicase domain protein
29Dd1591_14931712751..1713959 [+], 1209transposase mutator type
30Dd1591_14941714453..1714662 [-], 210transcriptional regulator, TraR/DksA family
31Dd1591_14951714652..1715236 [-], 585conserved hypothetical protein
32Dd1591_14961715253..1715447 [-], 195phage transcriptional regulator, AlpA
33Dd1591_14971715942..1716199 [-], 258transcriptional regulator, XRE family
34Dd1591_14981716313..1716591 [-], 279transcriptional regulator, XRE family
35Dd1591_14991716725..1717012 [+], 288putative transcriptional regulator, Nlp
36Dd1591_15001717345..1717590 [-], 246transcriptional regulator, XRE family
37Dd1591_15011717937..1718455 [+], 519type VI secretion system effector, Hcp1 family
38Dd1591_15021718568..1720421 [+], 1854type VI secretion system Vgr family protein
39Dd1591_15031720435..1720842 [+], 408Domain of unknown function DUF1795
40Dd1591_15041720854..1725227 [+], 4374YD repeat protein
41Dd1591_15051725224..1725649 [+], 426conserved hypothetical protein
42Dd1591_15071726467..1726898 [+], 432conserved hypothetical protein
43Dd1591_15081727147..1728073 [-], 927conserved hypothetical protein
44Dd1591_15091729091..1729402 [+], 312protein of unknown function DUF736TraF, T4SS component 
45Dd1591_15111730176..1730448 [-], 273putative transcriptional regulator, Nlp
46Dd1591_15121730674..1730910 [+], 237putative transcriptional regulator
47Dd1591_15131731123..1731410 [+], 288transcriptional regulator, XRE family
48Dd1591_15141731524..1732795 [-], 1272integrase family proteinIntegrase 
49Dd1591_15151733417..1733692 [+], 276transcriptional regulator, LysR family
50Dd1591_15161733788..1735197 [-], 1410amino acid permease-associated region
51Dd1591_15171735871..1736095 [-], 225conserved hypothetical protein
52Dd1591_15181736746..1737408 [+], 663two component transcriptional regulator, LuxR family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins46Fasta
Identified as part of this study from CP001655