ICEberg
I. Information of ICE
ICEberg ID1106
Name ICEMcSym(1271)-γ This ICE is derived from experimental literature
FamilyUnclassified
OrganismMesorhizobium ciceri WSM1271
Size (bp)7759
GC content [Genome] (%)-
Insertion site-
Functionγ region of the tripartite ICE
Species that ICE can be transferred to-
Nucleotide SequenceNC_014923 (complete ICE sequence in this genome)
Replicon-
Genome coordinates2444639..2452398 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEMcSym(1271)-γ is not available.



The graph information of ICEMcSym(1271)-γ components from NC_014923
Complete gene list of ICEMcSym(1271)-γ from NC_014923
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Mesci_23402440018..2442249 [-], 2232OmpA/MotB domain-containing protein
2Mesci_23412442447..2442893 [+], 447hypothetical protein
3Mesci_23422443147..2443503 [+], 357hypothetical protein
4Mesci_23432443715..2444428 [-], 714hypothetical protein
5Mesci_23442444746..2445936 [-], 1191integrase family proteinIntegrase 
6Mesci_23452446248..2446499 [-], 252hypothetical protein
7Mesci_23462446947..2448806 [-], 1860hypothetical protein
8Mesci_23472448803..2449249 [-], 447hypothetical protein
9Mesci_23482449246..2450460 [-], 1215hypothetical protein
10Mesci_23492450921..2452186 [-], 1266integrase family proteinIntegrase 
11Mesci_23502452793..2453665 [-], 873AraC type helix-turn-helix- domain containing protein
12Mesci_23512453772..2455043 [+], 1272family 1 extracellular solute-binding protein
13Mesci_23522455250..2456110 [+], 861binding-protein-dependent transport system inner membrane protein
14Mesci_23532456107..2456943 [+], 837binding-protein-dependent transport system inner membrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins6Fasta
(1) Haskett TL; Ramsay JP; Bekuma AA; Sullivan JT; O'Hara GW; Terpolilli JJ (2017). Evolutionary persistence of tripartite integrative and conjugative elements. Plasmid. 92:30-36. [PudMed:28669811]
(2) Haskett TL; Terpolilli JJ; Bekuma A; O'Hara GW; Sullivan JT; Wang P; Ronson CW; Ramsay JP (2016). Assembly and transfer of tripartite integrative and conjugative genetic elements. Proc Natl Acad Sci U S A. 113(43):12268-12273. [PudMed:27733511]
(3) Reeve W; Nandasena K; Yates R; Tiwari R; O'Hara G; Ninawi M; Gu W; Goodwin L; Detter C; Tapia R; Han C; Copeland A; Liolios K; Chen A; Markowitz V; Pati A; Mavromatis K; Woyke T; Kyrpides N; Ivanova N; Howieson J (2013). Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)). Stand Genomic Sci. 9(2):410-9. [PudMed:24976896]
(4) Reeve W; Nandasena K; Yates R; Tiwari R; O'Hara G; Ninawi M; Chertkov O; Goodwin L; Bruce D; Detter C; Tapia R; Han S; Woyke T; Pitluck S; Nolan M; Land M; Copeland A; Liolios K; Pati A; Mavromatis K; Markowitz V; Kyrpides N; Ivanova N; Goodwin L; Meenakshi U; Howieson J (2013). Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). Stand Genomic Sci. 9(2):294-303. [PudMed:24976886] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature