ICEberg
I. Information of ICE
ICEberg ID1101
Name ICEMcSym(1271)-β This ICE is derived from experimental literature
FamilyUnclassified
OrganismMesorhizobium ciceri WSM1271
Size (bp)22972
GC content [Genome] (%)-
Insertion site-
Functionβ region of the tripartite ICE
Species that ICE can be transferred to-
Nucleotide SequenceNC_014923 (complete ICE sequence in this genome)
Replicon-
Genome coordinates2669947..2692919 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEMcSym(1271)-β is not available.



The graph information of ICEMcSym(1271)-β components from NC_014923
Complete gene list of ICEMcSym(1271)-β from NC_014923
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Mesci_25442665642..2666931 [+], 1290Fmu (Sun) domain-containing protein
2Mesci_25452666901..2667014 [-], 114hypothetical protein
3Mesci_25462667072..2667530 [+], 459thioesterase superfamily protein
4Mesci_25472667672..2668340 [+], 6695'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
5Mesci_25482668389..2669951 [+], 1563GMP synthase large subunit
6Mesci_25492670269..2671522 [+], 1254integrase family proteinIntegrase 
7Mesci_25502671503..2671757 [-], 255prophage CP4-57 regulator
8Mesci_25542675491..2676213 [+], 723autoinducer-binding domain-containing protein
9Mesci_25552676309..2676860 [+], 552hypothetical protein
10Mesci_25562676919..2678388 [+], 1470tyrosinase
11Mesci_25572678421..2678990 [+], 570hypothetical protein
12Mesci_25582679243..2679605 [+], 363hypothetical protein
13Mesci_25592679815..2680486 [+], 672autoinducer synthesis protein
14Mesci_25602680511..2680924 [+], 414hypothetical protein
15Mesci_25612680988..2683093 [+], 2106multicopper oxidase type 2
16Mesci_25622683123..2683497 [+], 375blue (type 1) copper domain-containing protein
17Mesci_25632683959..2685176 [-], 1218hypothetical protein
18Mesci_25642685331..2685756 [+], 426hypothetical protein
19Mesci_25672687772..2690096 [-], 2325hypothetical protein
20Mesci_25682690326..2690553 [-], 228hypothetical protein
21Mesci_25692690550..2691644 [-], 1095transposase
22Mesci_25712692618..2693226 [+], 609hypothetical protein
23Mesci_25722693320..2694132 [-], 813NAD-dependent epimerase/dehydratase
24Mesci_25732694136..2695338 [-], 1203class I and II aminotransferase
25Mesci_25742695335..2696954 [-], 16205-oxoprolinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins16Fasta
(1) Haskett TL; Ramsay JP; Bekuma AA; Sullivan JT; O'Hara GW; Terpolilli JJ (2017). Evolutionary persistence of tripartite integrative and conjugative elements. Plasmid. 92:30-36. [PudMed:28669811]
(2) Haskett TL; Terpolilli JJ; Bekuma A; O'Hara GW; Sullivan JT; Wang P; Ronson CW; Ramsay JP (2016). Assembly and transfer of tripartite integrative and conjugative genetic elements. Proc Natl Acad Sci U S A. 113(43):12268-12273. [PudMed:27733511]
(3) Reeve W; Nandasena K; Yates R; Tiwari R; O'Hara G; Ninawi M; Gu W; Goodwin L; Detter C; Tapia R; Han C; Copeland A; Liolios K; Chen A; Markowitz V; Pati A; Mavromatis K; Woyke T; Kyrpides N; Ivanova N; Howieson J (2013). Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)). Stand Genomic Sci. 9(2):410-9. [PudMed:24976896]
(4) Reeve W; Nandasena K; Yates R; Tiwari R; O'Hara G; Ninawi M; Chertkov O; Goodwin L; Bruce D; Detter C; Tapia R; Han S; Woyke T; Pitluck S; Nolan M; Land M; Copeland A; Liolios K; Pati A; Mavromatis K; Markowitz V; Kyrpides N; Ivanova N; Goodwin L; Meenakshi U; Howieson J (2013). Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). Stand Genomic Sci. 9(2):294-303. [PudMed:24976886] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature