ICEberg
I. Information of ICE
ICEberg ID110
Name bph-sal This ICE is derived from experimental literature
FamilyUnclassified
OrganismPseudomonas putida KF715
Size (bp)~90 kb
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAY275274; AY294313 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of bph-sal is not available.



The graph information of bph-sal components from AY275274
Incomplete gene list of bph-sal from AY275274
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1int1..1896 [+], 1896integraseIntegrase 


The graph information of bph-sal components from AY294313
Incomplete gene list of bph-sal from AY294313
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1nahR305..1207 [-], 903NahR
2nahG1363..2676 [+], 1314salicylate hydroxylase
3nahT3119..3457 [+], 339xylT-like ferredoxin
4nahH3454..4377 [+], 924catechol 2,3-dioxygenase
5nahI4412..5872 [+], 1461hydoroxymuconic semialdehyde dehydrogenase
6nahN5883..6731 [+], 849hydoroxymuconic semialdehyde hydrolase
7nahL6728..7528 [+], 8012-oxopent-4-enoate hydratase
8nahO7543..8466 [+], 924acetaldehyde dehydrogenase
9nahM8479..9519 [+], 10412-oxo-4-hydroxypentanoate aldolase
10nahK9516..10310 [+], 7954-oxalocrotonate decarboxylase
11nahJ10359..10550 [+], 1924-oxalocrotonate isomerase
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Nishi A; Tominaga K; Furukawa K (2000). A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J Bacteriol. 182(7):1949-55. [PudMed:10715002] experimental
 
experimental experimental literature