ICEberg
I. Information of ICE
ICEberg ID109
Name R997 This ICE is derived from experimental literature
FamilySXT/R391
OrganismProteus mirabilis
Size (bp)~85 kb
GC content [Genome] (%)-
Insertion siteprfC
FunctionResistance to ampicillin, streptomycin and sulfonamide
Species that ICE can be transferred to-
Nucleotide SequenceAJ579927; AJ579926; AJ579928; AJ579930; AJ580009; EF434299; EF434292; AM412759 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of R997 is not available.



The graph information of R997 components from AJ580009
Incomplete gene list of R997 from AJ580009
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1setR1..269 [+], 269putative transcriptional regulator


The graph information of R997 components from AJ579930
Incomplete gene list of R997 from AJ579930
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-56..265 [+], 210putative conjugative transfer protein


The graph information of R997 components from AJ579928
Incomplete gene list of R997 from AJ579928
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..608 [+], 608putative transfer proteinTraD_F, T4SS component 


The graph information of R997 components from AJ579927
Incomplete gene list of R997 from AJ579927
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1int1..1106 [+], 1106putative integraseIntegrase 


The graph information of R997 components from AM412759
Incomplete gene list of R997 from AM412759
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1jef1..201 [+], 201putative excisionase


The graph information of R997 components from EF434299
Incomplete gene list of R997 from EF434299
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1eexS21..432 [+], 432EexS2


The graph information of R997 components from EF434292
Incomplete gene list of R997 from EF434292
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1traG1..144 [+], 144TraGTraG_F, T4SS component 
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Daccord A; Mursell M; Poulin-Laprade D; Burrus V (2012). Dynamics of the SetCD-Regulated Integration and Excision of Genomic Islands Mobilized by Integrating Conjugative Elements of the SXT/R391 Family. J Bacteriol. 194(21):5794-802. [PudMed:22923590] experimental
(2) Marrero J; Waldor MK (2007). The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 189(8):3302-5. [PudMed:17307849] experimental
(3) McGrath BM; O'Halloran JA; Pembroke JT (2005). Pre-exposure to UV irradiation increases the transfer frequency of the IncJ conjugative transposon-like elements R391, R392, R705, R706, R997 and pMERPH and is recA+ dependent. FEMS Microbiol Lett. 243(2):461-5. [PudMed:15686850] experimental
(4) McGrath BM; Pembroke JT (2004). Detailed analysis of the insertion site of the mobile elements R997, pMERPH, R392, R705 and R391 in E. coli K12. FEMS Microbiol Lett. 237(1):19-26. [PudMed:15268933] experimental
(5) Boltner D; Osborn AM (2004). Structural comparison of the integrative and conjugative elements R391, pMERPH, R997, and SXT. Plasmid. 51(1):12-23. [PudMed:14711525] experimental
(6) Murphy DB; Pembroke JT (1999). Monitoring of chromosomal insertions of the IncJ elements R391 and R997 in Escherichia coli K-12. FEMS Microbiol Lett. 174(2):355-61. [PudMed:10339829] experimental
(7) Matthew M; Hedges RW; Smith JT (1979). Types of beta-lactamase determined by plasmids in gram-negative bacteria. J Bacteriol. 138(3):657-62. [PudMed:378931] experimental
 
experimental experimental literature