ICEberg
I. Information of ICE
ICEberg ID1084
Name Pac_ICE2_it This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPseudomonas syringae pv. Actinidiae ICMP18744
Size (bp)108802
GC content [Genome] (%)54.32
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC148186 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..108802 
Putative oriT region -
Putative relaxase coordinates: 1861..3786;   Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of Pac_ICE2_it is not available.



The graph information of Pac_ICE2_it components from KC148186
Complete gene list of Pac_ICE2_it from KC148186
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-443..1864 [-], 1422integrase
2-1861..3786 [-], 1926pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase E2 componentRelaxase, MOBH Family
3-4372..10800 [+], 6429hypothetical protein
4-10790..10933 [+], 144hypothetical protein
5-11319..11666 [+], 348arsenical resistance operon repressor
6-11723..12193 [+], 471arsenate reductase
7-12205..12906 [+], 702arsenic resistance protein ArsH
8-13032..13493 [-], 462hypothetical protein
9-13601..14293 [-], 693protein of unknown function DUF159
10-14407..14841 [+], 435error-prone repair protein UmuD
11-14927..16108 [+], 1182error-prone lesion bypass DNA polymerase V
12-16230..16451 [+], 222hypothetical protein
13-16609..16968 [+], 360hypothetical protein
14-17122..17370 [+], 249hypothetical protein
15-17529..17909 [+], 381hypothetical protein
16-17958..19496 [-], 1539putative membrane proteinTfc19, T4SS component 
17-19493..19813 [-], 321hypothetical protein
18-19870..21237 [-], 1368hypothetical proteinTfc22, T4SS component 
19-21258..22199 [-], 942hypothetical proteinTfc23, T4SS component 
20-22196..22633 [-], 438hypothetical proteinTfc24, T4SS component 
21-22632..22757 [+], 126hypothetical protein
22-22914..23177 [-], 264hypothetical protein
23-23386..23781 [-], 396hypothetical protein
24-23792..24424 [-], 633hypothetical protein
25-24808..25503 [-], 696protein-disulfide isomerase
26-25500..25799 [-], 300hypothetical protein
27-25796..28813 [-], 3018type IV secretory pathway VirB4 componentTfc16, T4SS component 
28-28813..29262 [-], 450putative lipoproteinTfc15, T4SS component 
29-29246..30733 [-], 1488putative exported proteinTfc14, T4SS component 
30-30723..31646 [-], 924hypothetical proteinTfc13, T4SS component 
31-31643..32311 [-], 669putative exported proteinTfc12, T4SS component 
32-32308..32700 [-], 393hypothetical proteinTfc11, T4SS component 
33-32716..33081 [-], 366hypothetical proteinTfc10, T4SS component 
34-33101..33340 [-], 240hypothetical protein
35-33337..33657 [-], 321putative type III effector hop proteinTfc9, T4SS component 
36-33779..34111 [-], 333aconitase B
37-34121..35584 [-], 1464putative DNA helicaseTraI_F, T4SS component 
38-35594..36343 [-], 750putative membrane proteinTfc8, T4SS component 
39-36380..38539 [-], 2160type IV secretory pathway VirD4 componentTfc6, T4SS component 
40-38551..39057 [-], 507hypothetical proteinTfc5, T4SS component 
41-39054..39611 [-], 558soluble lytic murein transglycosylase-related regulatory proteinTfc4, T4SS component 
42-39596..40342 [-], 747putative exported protein STY4558Tfc3, T4SS component 
43-40351..41064 [-], 714methyl-accepting chemotaxis proteinTfc2, T4SS component 
44-41235..43415 [-], 2181hypothetical protein
45-43625..45883 [-], 2259superfamily II DNA/RNA helicases SNF2 family
46-45980..47440 [-], 1461plasmid-related protein
47-47443..48069 [-], 627hypothetical protein
48-48135..48659 [-], 525hypothetical protein
49-48745..49356 [-], 612hypothetical protein
50-49457..49792 [-], 336hypothetical protein
51-49893..50195 [-], 303hypothetical protein
52-50272..50427 [-], 156hypothetical protein
53-50498..51052 [-], 555periplasmic protein TonB
54-51417..51782 [-], 366hypothetical protein
55-52072..52341 [-], 270hypothetical protein
56-53146..55167 [-], 2022DNA topoisomerase III
57-55403..56245 [-], 843hypothetical protein
58-56245..56427 [-], 183hypothetical protein
59-56825..57787 [+], 963SAM-like phage integraseIntegrase 
60-57761..58006 [-], 246hypothetical protein
61-58502..58882 [-], 381putative lipoprotein
62-59212..60252 [-], 1041surface antigen
63-60362..61258 [-], 897LysR family transcriptional regulator YeiE
64-61376..62545 [+], 1170C4-dicarboxylate transporter/malic acid transport protein
65-62554..63156 [-], 603IS1415 transposase istA/B
66-63156..63701 [-], 546inorganic pyrophosphatase
67-63817..65100 [-], 1284enolase
68-65174..65515 [-], 342hypothetical protein
69-65610..65876 [-], 267hypothetical protein
70-65919..66242 [-], 324hypothetical protein
71-66323..66688 [-], 366hypothetical protein
72-66685..67740 [-], 1056chloride channel protein
73-68280..68603 [-], 324hypothetical protein
74-68614..69357 [-], 744arsenical-resistance protein ACR3
75-69449..69883 [+], 435transcriptional regulator MerR family
76-70033..70149 [+], 117hypothetical protein
77-70317..70541 [-], 225hypothetical protein
78-70704..70820 [-], 117hypothetical protein
79-70854..71099 [+], 246hypothetical protein
80-71225..72844 [-], 1620methyl-accepting chemotaxis protein I
81-73037..73720 [+], 684hypothetical protein
82-73722..74063 [+], 342tyrosine recombinase XerC
83-74138..74470 [+], 333hypothetical protein
84-74467..74802 [+], 336ISPpu14 transposase
85-74886..76412 [+], 1527mobile element protein
86-76750..78735 [+], 1986methyl-accepting chemotaxis protein I
87-78938..79555 [+], 618tyrosine recombinase XerC
88-79582..79995 [-], 414hypothetical protein
89-80656..81036 [-], 381hypothetical protein
90-81232..81555 [-], 324hypothetical protein
91-81871..82203 [-], 333hypothetical protein
92-82157..82294 [+], 138hypothetical protein
93-82391..82540 [-], 150hypothetical protein
94-82537..82659 [-], 123hypothetical protein
95-82660..83100 [-], 441conjugative transfer protein PilM
96-83131..84498 [-], 1368conjugative transfer pilus-tip adhesin protein PilV
97-84495..85427 [-], 933conjugative transfer ATPase PilUTraJ_I, T4SS component 
98-85430..85951 [-], 522conjugative transfer protein PilS
99-85989..87080 [-], 1092conjugative transfer protein PilR
100-87070..88695 [-], 1626bundle-forming pilus protein BfpDDotB, T4SS component 
101-88692..89243 [-], 552conjugative transfer protein PilP
102-89284..90642 [-], 1359conjugative transfer protein PilO
103-90644..92377 [-], 1734conjugative transfer protein PilN
104-92380..93522 [-], 1143conjugative transfer protein PilLTfc2, T4SS component 
105-93573..93686 [+], 114hypothetical protein
106-93758..94006 [-], 249hypothetical protein
107-94105..96057 [-], 1953DNA/RNA helicase
108-96070..96423 [-], 354hypothetical protein
109-96491..96673 [+], 183hypothetical protein
110-96775..96975 [-], 201hypothetical protein
111-97120..97236 [-], 117hypothetical protein
112-97548..97997 [-], 450single-stranded DNA-binding protein
113-97999..98571 [-], 573integrase regulator R
114-98571..99350 [-], 780hypothetical protein
115-99343..99855 [-], 513hypothetical protein
116-99858..101228 [-], 1371hypothetical protein
117-101228..101965 [-], 738hypothetical protein
118-102002..103654 [-], 1653protein with parB-like nuclease domain
119-103768..104031 [-], 264alginate biosynthesis transcriptional activator
120-104021..104266 [-], 246hypothetical protein
121-104263..104664 [-], 402hypothetical protein
122-104666..105007 [-], 342hypothetical protein
123-105004..106350 [-], 1347replicative DNA helicase
124-106350..107048 [-], 699hypothetical protein
125-107045..107800 [-], 756hypothetical protein
126-107802..108662 [-], 861parA-like chromosome partitioning ATPase
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins126Fasta
(1) Butler MI; Stockwell PA; Black MA; Day RC; Lamont IL; Poulter RT (2013). Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One. 8(2):e57464. [PudMed:23555547] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature