ICEberg
I. Information of ICE
ICEberg ID1082
Name Pac_ICE1_nz This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPseudomonas syringae pv. Actinidiae ICMP18708
Size (bp)100903
GC content [Genome] (%)54.82
Insertion sitetRNALys
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC148184 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..100903 
Putative oriT region -
Putative relaxase coordinates: 1949..3865;   Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of Pac_ICE1_nz is not available.



The graph information of Pac_ICE1_nz components from KC148184
Complete gene list of Pac_ICE1_nz from KC148184
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-549..1952 [-], 1404integrase
2-1949..3865 [-], 1917pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase E2 componentRelaxase, MOBH Family
3-4282..4974 [-], 693protein of unknown function DUF159
4-5088..5522 [+], 435error-prone repair protein UmuD
5-5509..6789 [+], 1281error-prone lesion bypass DNA polymerase V
6-7009..7398 [+], 390hypothetical protein
7-7449..8987 [-], 1539putative membrane proteinTfc19, T4SS component 
8-8984..9358 [-], 375hypothetical protein
9-9361..10728 [-], 1368hypothetical proteinTfc22, T4SS component 
10-10749..11555 [-], 807hypothetical proteinTfc23, T4SS component 
11-11684..12115 [-], 432hypothetical proteinTfc24, T4SS component 
12-12448..12699 [+], 252hypothetical protein
13-12846..12968 [+], 123hypothetical protein
14-13071..13334 [+], 264hypothetical protein
15-13469..13657 [+], 189hypothetical protein
16-13720..13962 [+], 243hypothetical protein
17-14053..14289 [+], 237hypothetical protein
18-14378..14602 [+], 225hypothetical protein
19-14656..14907 [+], 252hypothetical protein
20-14917..15132 [+], 216hypothetical protein
21-15182..16732 [-], 1551C-5 cytosine-specific DNA methylase
22-17006..17200 [+], 195hypothetical protein
23-17872..18204 [+], 333hypothetical protein
24-18201..18536 [+], 336ISPpu14 transposase
25-18620..20146 [+], 1527mobile element protein
26-20418..22469 [+], 2052methyl-accepting chemotaxis protein I
27-22774..23460 [-], 687protein-disulfide isomerase
28-23457..23756 [-], 300hypothetical protein
29-23753..26761 [-], 3009type IV secretory pathway VirB4 componentTfc16, T4SS component 
30-26761..27081 [-], 321putative lipoproteinTfc15, T4SS component 
31-27194..28678 [-], 1485putative exported proteinTfc14, T4SS component 
32-28668..29591 [-], 924hypothetical proteinTfc13, T4SS component 
33-29588..30256 [-], 669putative exported proteinTfc12, T4SS component 
34-30253..30645 [-], 393hypothetical proteinTfc11, T4SS component 
35-30661..31029 [-], 369hypothetical proteinTfc10, T4SS component 
36-31049..31288 [-], 240hypothetical protein
37-31285..31689 [-], 405putative type III effector hop proteinTfc9, T4SS component 
38-31898..32845 [+], 948hypothetical protein
39-32903..33217 [-], 315aconitase B
40-33385..33816 [+], 432hypothetical protein
41-33840..35297 [-], 1458putative DNA helicaseTraI_F, T4SS component 
42-35307..36056 [-], 750putative membrane proteinTfc8, T4SS component 
43-36096..38255 [-], 2160type IV secretory pathway VirD4 componentTfc6, T4SS component 
44-38267..38773 [-], 507hypothetical proteinTfc5, T4SS component 
45-38770..39327 [-], 558soluble lytic murein transglycosylase-related regulatory proteinTfc4, T4SS component 
46-39312..40058 [-], 747putative exported protein STY4558Tfc3, T4SS component 
47-40067..40777 [-], 711methyl-accepting chemotaxis proteinTfc2, T4SS component 
48-41327..41461 [+], 135hypothetical protein
49-41800..44064 [-], 2265superfamily II DNA/RNA helicases SNF2 family
50-44171..45622 [-], 1452plasmid-related protein
51-45652..46251 [-], 600hypothetical protein
52-46318..46842 [-], 525hypothetical protein
53-46931..47542 [-], 612hypothetical protein
54-47638..47973 [-], 336hypothetical protein
55-48450..48605 [-], 156hypothetical protein
56-48676..49248 [-], 573periplasmic protein TonB
57-49345..49575 [-], 231hypothetical protein
58-49880..50245 [-], 366hypothetical protein
59-50430..50978 [-], 549putative regulatory protein
60-51327..51593 [-], 267hypothetical protein
61-52413..54434 [-], 2022DNA topoisomerase III
62-55328..56290 [+], 963SAM-like phage integraseIntegrase 
63-56264..56509 [-], 246hypothetical protein
64-57005..57385 [-], 381putative lipoprotein
65-57715..58707 [-], 993surface antigen
66-58865..59761 [-], 897LysR family transcriptional regulator YeiE
67-59879..61048 [+], 1170C4-dicarboxylate transporter/malic acid transport protein
68-61057..61659 [-], 603IS1415 transposase istA/B
69-61659..62204 [-], 546inorganic pyrophosphatase
70-62320..63603 [-], 1284enolase
71-63677..64018 [-], 342hypothetical protein
72-64113..64379 [-], 267hypothetical protein
73-64422..64745 [-], 324hypothetical protein
74-64826..64963 [-], 138hypothetical protein
75-65188..66534 [-], 1347chloride channel protein
76-66783..67106 [-], 324hypothetical protein
77-67117..67860 [-], 744arsenical-resistance protein ACR3
78-68087..68215 [-], 129hypothetical protein
79-68536..68652 [+], 117hypothetical protein
80-68820..69044 [-], 225hypothetical protein
81-69357..69602 [+], 246hypothetical protein
82-69728..71347 [-], 1620methyl-accepting chemotaxis protein I
83-71540..72100 [+], 561hypothetical protein
84-72085..73044 [+], 960tyrosine recombinase XerC
85-73603..74043 [-], 441conjugative transfer protein PilM
86-74075..75481 [-], 1407conjugative transfer pilus-tip adhesin protein PilV
87-75478..76410 [-], 933conjugative transfer ATPase PilUTraJ_I, T4SS component 
88-76413..76937 [-], 525conjugative transfer protein PilS
89-76976..78067 [-], 1092conjugative transfer protein PilR
90-78057..79688 [-], 1632conjugative transfer ATPase PilQTraJ_I, T4SS component 
91-79685..80287 [-], 603conjugative transfer protein PilP
92-80277..81635 [-], 1359conjugative transfer protein PilO
93-81637..83367 [-], 1731conjugative transfer protein PilN
94-83370..84503 [-], 1134conjugative transfer protein PilLTfc2, T4SS component 
95-84708..84956 [-], 249hypothetical protein
96-85056..87008 [-], 1953DNA/RNA helicase
97-87011..88897 [-], 1887hypothetical protein
98-89002..89184 [-], 183hypothetical protein
99-89265..89510 [-], 246hypothetical protein
100-89564..89683 [-], 120hypothetical protein
101-89717..90187 [-], 471single-stranded DNA-binding protein
102-90189..90764 [-], 576integrase regulator R
103-90770..91549 [-], 780hypothetical protein
104-91692..91892 [+], 201hypothetical protein
105-91949..93313 [-], 1365hypothetical protein
106-93319..94056 [-], 738hypothetical protein
107-94093..95853 [-], 1761protein with parB-like nuclease domain
108-95856..96173 [-], 318alginate biosynthesis transcriptional activator
109-96109..96354 [-], 246hypothetical protein
110-96351..96758 [-], 408hypothetical protein
111-96760..96933 [-], 174hypothetical protein
112-97098..98429 [-], 1332replicative DNA helicase
113-98444..99145 [-], 702hypothetical protein
114-99142..99897 [-], 756hypothetical protein
115-99899..100759 [-], 861parA-like chromosome partitioning ATPase
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins115Fasta
(1) Butler MI; Stockwell PA; Black MA; Day RC; Lamont IL; Poulter RT (2013). Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One. 8(2):e57464. [PudMed:23555547] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature