ICEberg
I. Information of ICE
ICEberg ID1081
Name Pac_ICE1_cn This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPseudomonas syringae pv. Actinidiae M7 or CH2010-6
Size (bp)102575
GC content [Genome] (%)54.86
Insertion sitetRNALys
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC148185 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..102575 
Putative oriT region -
Putative relaxase coordinates: 1949..3865;   Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of Pac_ICE1_cn is not available.



The graph information of Pac_ICE1_cn components from KC148185
Complete gene list of Pac_ICE1_cn from KC148185
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-549..1952 [-], 1404integrase
2-1949..3865 [-], 1917pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase E2 componentRelaxase, MOBH Family
3-4282..4974 [-], 693protein of unknown function DUF159
4-5088..5522 [+], 435error-prone repair protein UmuD
5-5509..6789 [+], 1281error-prone lesion bypass DNA polymerase V
6-7009..7398 [+], 390hypothetical protein
7-7449..8987 [-], 1539putative membrane proteinTfc19, T4SS component 
8-8984..9358 [-], 375hypothetical protein
9-9361..10728 [-], 1368hypothetical proteinTfc22, T4SS component 
10-10749..11687 [-], 939hypothetical proteinTfc23, T4SS component 
11-11684..12115 [-], 432hypothetical proteinTfc24, T4SS component 
12-12448..12699 [+], 252hypothetical protein
13-12846..12968 [+], 123hypothetical protein
14-13071..13334 [+], 264hypothetical protein
15-13469..13657 [+], 189hypothetical protein
16-13720..13962 [+], 243hypothetical protein
17-14053..14289 [+], 237hypothetical protein
18-14378..14602 [+], 225hypothetical protein
19-14656..14907 [+], 252hypothetical protein
20-14917..15132 [+], 216hypothetical protein
21-15182..16597 [-], 1416type II restriction-modification system methylation subunit
22-17006..17200 [+], 195hypothetical protein
23-17309..17755 [-], 447hypothetical protein
24-17872..18204 [+], 333hypothetical protein
25-18171..18536 [+], 366ISPpu14 transposase
26-18620..20146 [+], 1527mobile element protein
27-20418..22469 [+], 2052methyl-accepting chemotaxis protein I
28-22774..23460 [-], 687protein-disulfide isomerase
29-23457..23756 [-], 300hypothetical protein
30-23753..26761 [-], 3009type IV secretory pathway VirB4 componentTfc16, T4SS component 
31-26761..27210 [-], 450putative lipoproteinTfc15, T4SS component 
32-27194..28678 [-], 1485putative exported proteinTfc14, T4SS component 
33-28668..29591 [-], 924hypothetical proteinTfc13, T4SS component 
34-29588..30256 [-], 669putative exported proteinTfc12, T4SS component 
35-30253..30645 [-], 393hypothetical proteinTfc11, T4SS component 
36-30661..31029 [-], 369hypothetical proteinTfc10, T4SS component 
37-31049..31288 [-], 240hypothetical protein
38-31285..31689 [-], 405putative type III effector hop proteinTfc9, T4SS component 
39-31898..32845 [+], 948hypothetical protein
40-32903..33217 [-], 315aconitase B
41-33385..33816 [+], 432hypothetical protein
42-33840..35297 [-], 1458putative DNA helicaseTraI_F, T4SS component 
43-35307..36056 [-], 750putative membrane proteinTfc8, T4SS component 
44-36096..38255 [-], 2160type IV secretory pathway VirD4 componentTfc6, T4SS component 
45-38267..38773 [-], 507hypothetical proteinTfc5, T4SS component 
46-38770..39327 [-], 558soluble lytic murein transglycosylase-related regulatory proteinTfc4, T4SS component 
47-39312..40058 [-], 747putative exported protein STY4558Tfc3, T4SS component 
48-40067..40777 [-], 711methyl-accepting chemotaxis proteinTfc2, T4SS component 
49-41327..41461 [+], 135hypothetical protein
50-41800..44064 [-], 2265superfamily II DNA/RNA helicases SNF2 family
51-44171..45622 [-], 1452plasmid-related protein
52-45652..46251 [-], 600hypothetical protein
53-46318..46842 [-], 525hypothetical protein
54-46931..47542 [-], 612hypothetical protein
55-47638..47973 [-], 336hypothetical protein
56-48450..48605 [-], 156hypothetical protein
57-48676..49248 [-], 573periplasmic protein TonB
58-49345..49575 [-], 231hypothetical protein
59-49880..50245 [-], 366hypothetical protein
60-50430..50978 [-], 549putative regulatory protein
61-51327..51593 [-], 267hypothetical protein
62-52413..54434 [-], 2022DNA topoisomerase III
63-54445..54588 [+], 144hypothetical protein
64-55328..56290 [+], 963SAM-like phage integraseIntegrase 
65-56264..56509 [-], 246hypothetical protein
66-57005..57385 [-], 381putative lipoprotein
67-57715..58755 [-], 1041surface antigen
68-58865..59761 [-], 897LysR family transcriptional regulator YeiE
69-59879..61048 [+], 1170C4-dicarboxylate transporter/malic acid transport protein
70-61057..61659 [-], 603IS1415 transposase istA/B
71-61659..62204 [-], 546inorganic pyrophosphatase
72-62320..63603 [-], 1284enolase
73-63667..64194 [+], 528hypothetical protein
74-64200..65246 [+], 1047mobile element protein
75-65349..65690 [-], 342hypothetical protein
76-65785..66051 [-], 267hypothetical protein
77-66094..66417 [-], 324hypothetical protein
78-66498..66863 [-], 366hypothetical protein
79-66860..68206 [-], 1347chloride channel protein
80-68455..68778 [-], 324hypothetical protein
81-68789..69532 [-], 744arsenical-resistance protein ACR3
82-69759..69887 [-], 129hypothetical protein
83-70165..70404 [+], 240hypothetical protein
84-70492..70716 [-], 225hypothetical protein
85-71029..71274 [+], 246hypothetical protein
86-71400..73019 [-], 1620methyl-accepting chemotaxis protein I
87-73212..73772 [+], 561hypothetical protein
88-73757..74716 [+], 960tyrosine recombinase XerC
89-75275..75715 [-], 441conjugative transfer protein PilM
90-75747..77153 [-], 1407conjugative transfer pilus-tip adhesin protein PilV
91-77150..78100 [-], 951conjugative transfer ATPase PilUTraJ_I, T4SS component 
92-78085..78609 [-], 525conjugative transfer protein PilS
93-78648..79739 [-], 1092conjugative transfer protein PilR
94-79729..81360 [-], 1632conjugative transfer ATPase PilQTraJ_I, T4SS component 
95-81357..81959 [-], 603conjugative transfer protein PilP
96-81949..83307 [-], 1359conjugative transfer protein PilO
97-83309..85045 [-], 1737conjugative transfer protein PilN
98-85042..86175 [-], 1134conjugative transfer protein PilLTfc2, T4SS component 
99-86380..86628 [-], 249hypothetical protein
100-86728..88680 [-], 1953DNA/RNA helicase
101-88683..90569 [-], 1887hypothetical protein
102-90674..90856 [-], 183hypothetical protein
103-90937..91182 [-], 246hypothetical protein
104-91236..91355 [-], 120hypothetical protein
105-91389..91859 [-], 471single-stranded DNA-binding protein
106-91861..92289 [-], 429integrase regulator R
107-92442..93221 [-], 780hypothetical protein
108-93369..93584 [-], 216hypothetical protein
109-93621..94994 [-], 1374hypothetical protein
110-94991..95728 [-], 738hypothetical protein
111-95765..97525 [-], 1761protein with parB-like nuclease domain
112-97528..97845 [-], 318alginate biosynthesis transcriptional activator
113-98023..98430 [-], 408hypothetical protein
114-98432..98605 [-], 174hypothetical protein
115-98770..100101 [-], 1332replicative DNA helicase
116-100116..100817 [-], 702hypothetical protein
117-100814..101569 [-], 756hypothetical protein
118-101571..102431 [-], 861parA-like chromosome partitioning ATPase
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins118Fasta
(1) Butler MI; Stockwell PA; Black MA; Day RC; Lamont IL; Poulter RT (2013). Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One. 8(2):e57464. [PudMed:23555547] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature