ICEberg
I. Information of ICE
ICEberg ID1039
Name ICETn43716061 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPseudomonas aeruginosa PS106-RJ
Size (bp)43841
GC content [Genome] (%)65.56
Insertion site-
Functionbcr1, bla(SPM-1)
Species that ICE can be transferred to-
Nucleotide SequenceKP299160 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..43841 
Putative oriT region -
Putative relaxase coordinates: 16329..18302; Locus tag: ICEPaeSP_00021;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICETn43716061 is not available.



The graph information of ICETn43716061 components from KP299160
Complete gene list of ICETn43716061 from KP299160
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1ICEPaeSP_000019..1208 [+], 1200integraseIntegrase 
2ICEPaeSP_000021205..2269 [+], 1065hypothetical protein
3ICEPaeSP_000032634..3143 [+], 510hypothetical protein
4ICEPaeSP_000043427..3777 [+], 351hypothetical protein
5ICEPaeSP_000053843..4121 [+], 279hypothetical protein
6ICEPaeSP_000064822..5646 [+], 825hypothetical protein
7spo0C5711..7768 [+], 2058Chromosome-partitioning protein Spo0J
8ICEPaeSP_000087830..8039 [+], 210hypothetical protein
9ICEPaeSP_000098894..9208 [+], 315hypothetical proteinTraF, T4SS component 
10ICEPaeSP_000109543..9836 [-], 294anaerobic benzoate catabolism transcriptional regulator
11ICEPaeSP_0001110060..10407 [+], 348hypothetical protein
12ICEPaeSP_0001210414..10803 [-], 390Transposase DDE domain protein
13ICEPaeSP_0001310773..11195 [-], 423hypothetical protein
14ICEPaeSP_0001411577..12356 [+], 780hypothetical protein
15ICEPaeSP_0001512440..12721 [+], 282Helix-turn-helix domain protein
16ICEPaeSP_0001612748..13605 [+], 858Replication initiator protein A
17soj13859..14497 [+], 639Chromosome-partitioning ATPase Soj
18ICEPaeSP_0001814494..14778 [+], 285hypothetical protein
19ICEPaeSP_0001914775..15308 [+], 534hypothetical protein
20ICEPaeSP_0002015305..15880 [+], 576Peptidase S26TraF, T4SS component 
21ICEPaeSP_0002116329..18302 [+], 1974hypothetical proteinRelaxase, MOBL Family
22bcr_118610..19797 [+], 1188Bicyclomycin resistance protein
23catM_119807..20751 [+], 945HTH-type transcriptional regulator CatM
24ICEPaeSP_0002420748..21014 [+], 267hypothetical protein
25ICEPaeSP_0002521250..21738 [+], 489hypothetical proteinTraG, T4SS component 
26ICEPaeSP_0002621881..23404 [-], 1524Putative transposase
27groL_123592..23894 [-], 30360 kDa chaperonin
28ICEPaeSP_0002824005..24835 [-], 831Beta-lactamase IMP-1 precursorAR 
29ICEPaeSP_0002925255..26778 [-], 1524Putative transposase
30groL_226966..27502 [-], 53760 kDa chaperonin
31ICEPaeSP_0003127697..28602 [+], 906hypothetical protein
32bcr_228910..30097 [+], 1188Bicyclomycin resistance protein
33catM_230107..31051 [+], 945HTH-type transcriptional regulator CatM
34ICEPaeSP_0003431048..31314 [+], 267hypothetical protein
35traG31550..33550 [+], 2001Conjugal transfer protein TraGVirD4, T4SS component 
36ICEPaeSP_0003633547..34011 [+], 465hypothetical protein
37ptlH34008..35060 [+], 1053Type IV secretion system protein PtlHTrbB, T4SS component 
38ICEPaeSP_0003835057..35440 [+], 384TrbC/VIRB2 family proteinTrbC, T4SS component 
39ICEPaeSP_0003935437..35709 [+], 273Type IV secretory pathway, VirB3-like proteinTrbD, T4SS component 
40virB435722..38187 [+], 2466Type IV secretion system protein virB4TrbE, T4SS component 
41ICEPaeSP_0004138184..38939 [+], 756hypothetical proteinTrbJ, T4SS component 
42ICEPaeSP_0004238951..39250 [+], 300hypothetical proteinTrbJ, T4SS component 
43ICEPaeSP_0004339247..40596 [+], 1350TrbL/VirB6 plasmid conjugal transfer proteinTrbL, T4SS component 
44ICEPaeSP_0004440608..41312 [+], 705VirB8 proteinTrbF, T4SS component 
45ptlF41309..42301 [+], 993Type IV secretion system protein PtlF precursorTrbG, T4SS component 
46ICEPaeSP_0004642304..43587 [+], 1284Type IV secretion system protein virB10TrbI, T4SS component 
47ICEPaeSP_0004743584..43829 [+], 246hypothetical protein
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins47Fasta
(1) Botelho J; Grosso F; Quinteira S; Brilhante M; Ramos H; Peixe L (2018). Two decades of blaVIM-2-producing Pseudomonas aeruginosa dissemination: an interplay between mobile genetic elements and successful clones. J Antimicrob Chemother. 73(4):873-882. [PudMed:29373674] experimental in_silico
(2) Fonseca EL; Vicente AC (2016). Commentary: Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Front Microbiol. 0.826388889. [PudMed:27242778]
(3) Fonseca EL; Marin MA; Encinas F; Vicente AC (2015). Full characterization of the integrative and conjugative element carrying the metallo-beta-lactamase bla SPM-1 and bicyclomycin bcr1 resistance genes found in the pandemic Pseudomonas aeruginosa clone SP/ST277. J Antimicrob Chemother. 70(9):2547-50. [PudMed:26093374] in_silico
 
experimental experimental literature
in_silico in silico analysis literature