ICEberg
I. Information of ICE
ICEberg ID1034
Name ICEPspSpa1 This ICE is derived from experimental literature
FamilySXT/R391
OrganismPseudoalteromonas sp. BSi20311
Size (bp)-
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceHG794402; HG79440; HG794404; HG794405; HG794401 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEPspSpa1 is not available.



The graph information of ICEPspSpa1 components from HG794402
Incomplete gene list of ICEPspSpa1 from HG794402
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1enispa1-1194..820 [+], 627hypothetical protein
2enispa1-21032..1931 [+], 900putative Zn peptidase


The graph information of ICEPspSpa1 components from HG794403
Incomplete gene list of ICEPspSpa1 from HG794403
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1mosA412..1245 [+], 834putative MosA antitoxin component
2mosT1238..2176 [+], 939putative MosT toxin component


The graph information of ICEPspSpa1 components from HG794404
Incomplete gene list of ICEPspSpa1 from HG794404
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1vflind-23787..4470 [-], 684putative deoxyribonuclease I


The graph information of ICEPspSpa1 components from HG794405
Incomplete gene list of ICEPspSpa1 from HG794405
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1pspspa1-9666..1520 [-], 855hypothetical protein
2pspspa1-101530..1874 [-], 345putative XRE family transcriptional regulator
3pspspa1-112554..3585 [+], 1032hypothetical protein
4pspspa1-123707..5314 [+], 1608putative thiamine biosynthesis protein ThiF
5pspspa1-135286..5783 [+], 498hypothetical protein
6pspspa1-145776..7338 [+], 1563hypothetical protein


The graph information of ICEPspSpa1 components from HG794401
Incomplete gene list of ICEPspSpa1 from HG794401
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1pspspa1-11922..3679 [+], 1758hypothetical protein
2pspspa1-23669..5018 [+], 1350hypothetical protein
3pspspa1-35011..6219 [+], 1209hypothetical protein
4pspspa1-46229..9411 [+], 3183putative DEAD/DEAH box helicase
5pspspa1-59427..11625 [+], 2199putative GTPase subunit of restriction endonuclease
6pspspa1-611625..12752 [+], 1128putative McrBC 5-methylcytosine restriction system component
7pspspa1-712752..13204 [+], 453hypothetical protein
 

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Rodriguez-Blanco A; Lemos ML; Osorio CR (2016). Unveiling the pan-genome of the SXT/R391 family of ICEs: molecular characterisation of new variable regions of SXT/R391-like ICEs detected in Pseudoalteromonas sp. and Vibrio scophthalmi. Antonie Van Leeuwenhoek. 109(8):1141-52. [PudMed:27230650]