ICEberg
I. Information of ICE
ICEberg ID102
Name Tn5386 This ICE is derived from experimental literature
FamilyUnclassified
OrganismEnterococcus faecium D344R
Size (bp)29172
GC content [Genome] (%)39.98
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceDQ321786 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates67..29238 
Putative oriT region -
Putative relaxase coordinates: 7301..8422;   Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of Tn5386 is not available.



The graph information of Tn5386 components from DQ321786
Complete gene list of Tn5386 from DQ321786
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-281..3340 [+], 3060hypothetical protein
2-3574..3900 [+], 327hypothetical protein
3-3915..4298 [+], 384hypothetical protein
4-4501..5112 [+], 612hypothetical protein
5-5180..6571 [+], 1392hypothetical proteinOrf21_Tn, T4SS component 
6-6568..6972 [+], 405hypothetical protein
7-7301..8422 [+], 1122hypothetical proteinRelaxase, MOBT Family
8-8429..8572 [+], 144hypothetical protein
9-8569..8790 [+], 222hypothetical proteinOrf19_Tn, T4SS component 
10-8875..9066 [+], 192hypothetical protein
11-9188..9400 [+], 213hypothetical protein
12-9397..9909 [+], 513hypothetical protein
13-9909..10415 [+], 507hypothetical protein
14-10579..10977 [+], 399hypothetical proteinOrf17_Tn, T4SS component 
15-10955..16085 [+], 5131hypothetical proteinOrf16_Tn, T4SS component 
16-13202..15028 [+], 1827hypothetical protein
17-16085..18295 [+], 2211hypothetical proteinOrf15_Tn, T4SS component 
18-18292..19299 [+], 1008hypothetical proteinOrf14_Tn, T4SS component 
19-19317..20222 [+], 906hypothetical proteinOrf13_Tn, T4SS component 
20-20377..21081 [+], 705hypothetical protein
21-21074..21832 [+], 759hypothetical protein
22-21834..22586 [+], 753hypothetical protein
23-22599..23267 [+], 669hypothetical protein
24-23249..24619 [+], 1371hypothetical protein
25-24735..25046 [+], 312hypothetical protein
26-25086..25454 [-], 369hypothetical protein
27-25611..25835 [+], 225hypothetical protein
28-25854..26219 [+], 366hypothetical protein
29-26652..27080 [+], 429hypothetical protein
30-27067..27315 [+], 249hypothetical protein
31XisTn538627721..27927 [+], 207excisionase
32IntTn538628008..29207 [+], 1200integraseIntegrase 
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins32Fasta
(1) Rice LB; Carias LL; Hutton-Thomas R; Rudin S (2007). Interaction of related Tn916-like transposons: analysis of excision events promoted by Tn916 and Tn5386 integrases. J Bacteriol. 189(10):3909-17. [PudMed:17322310] experimental
(2) Rice LB; Carias LL; Marshall S; Rudin SD; Hutton-Thomas R (2005). Tn5386, a novel Tn916-like mobile element in Enterococcus faecium D344R that interacts with Tn916 to yield a large genomic deletion. J Bacteriol. 187(19):6668-77. [PudMed:16166528] experimental
 
experimental experimental literature