ICEberg
I. Information of ICE
ICEberg ID1007
Name ICEMprChn1 This is a predicted ICE derived from literature
FamilySXT/R391
OrganismMarinomonas profundimaris D104
Size (bp)86.4 kb
GC content [Genome] (%)46.9
Insertion site5' end of an typical host prfC gene
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAYOZ01000034; AYOZ01000017; AYOZ01000022; AYOZ01000004 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEMprChn1 is not available.



The graph information of ICEMprChn1 components from AYOZ01000004
Incomplete gene list of ICEMprChn1 from AYOZ01000004
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1D104_04160102598..103614 [-], 1017endonuclease
2D104_04165103675..103818 [-], 144hypothetical protein
3D104_04170103900..104718 [-], 819recombinase
4D104_04175104798..105217 [-], 420single-stranded DNA-binding protein
5D104_04180105233..105559 [-], 327hypothetical protein
6D104_04185105927..106529 [+], 603hypothetical protein
7D104_04190106620..107282 [-], 663hypothetical protein
8D104_04195107313..107786 [-], 474hypothetical protein
9D104_04200107877..111569 [-], 3693conjugal transfer protein TraNTraN_F, T4SS component 
10D104_04205111572..112600 [-], 1029conjugal transfer protein TraUTraU_F, T4SS component 
11D104_04210112584..113711 [-], 1128type-F conjugative transfer system pilin assembly family proteinTraW_F, T4SS component 
12D104_04215113719..114231 [-], 513trsFTraF, T4SS component 
13D104_04220114215..114562 [-], 348hypothetical protein
14D104_04225114555..116954 [-], 2400conjugal transfer protein TraCTraC_F, T4SS component 
15D104_04230116954..117646 [-], 693disulfide isomeraseTrbB_I, T4SS component 


The graph information of ICEMprChn1 components from AYOZ01000017
Incomplete gene list of ICEMprChn1 from AYOZ01000017
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1D104_09920535..1440 [+], 906exonuclease
2D104_099251654..1953 [+], 300hypothetical protein
3D104_099302271..3206 [+], 936hypothetical protein
4D104_099353244..6576 [+], 3333helicase
5D104_099406580..7266 [+], 687hypothetical protein
6D104_099457349..9295 [+], 1947DNA methyltransferase
7D104_099509305..12382 [+], 3078type III restriction enzyme, res subunit
8D104_0995512456..13310 [+], 855restriction endonuclease
9D104_0996013405..15555 [+], 2151phosphohydrolaseRelaxase, MOBH Family
10D104_0996515604..17424 [+], 1821traDTraD_F, T4SS component 
11D104_0997017434..17994 [+], 561hypothetical protein
12D104_0997517981..18616 [+], 636conjugation coupling factor
13D104_0998018888..20444 [+], 1557integraseIntegrase 
14D104_0998520464..20559 [+], 96hypothetical protein
15D104_0999522159..22377 [+], 219threonine transporter
16D104_1000022409..22651 [+], 243hypothetical protein
17D104_1000522667..23374 [-], 708hypothetical protein
18D104_1001023443..23814 [-], 372hypothetical protein
19D104_1001523904..24596 [-], 693TetR family transcriptional regulator
20D104_1002024595..25641 [+], 1047RND transporter
21D104_1002525638..28679 [+], 3042multidrug transporter
22D104_1003028764..29378 [-], 615SAM-dependent methyltransferase
23D104_1003529590..29823 [+], 234hypothetical protein
24D104_1004030047..31351 [-], 1305transposase IS4


The graph information of ICEMprChn1 components from AYOZ01000022
Incomplete gene list of ICEMprChn1 from AYOZ01000022
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1D104_104451..1175 [+], 1175transposase
2D104_104501251..1946 [+], 696ATPase AAA
3D104_104552025..2597 [-], 573hypothetical protein
4D104_104602886..3167 [+], 282conjugal transfer protein TraLTraL_F, T4SS component 
5D104_104653164..3790 [+], 627traETraE_F, T4SS component 
6D104_104703771..4670 [+], 900traK family proteinTraK_F, T4SS component 
7D104_104754673..5962 [+], 1290conjugal transfer protein TraBTraB_F, T4SS component 
8D104_104805959..6609 [+], 651conjugal transfer protein TraVTraV_F, T4SS component 
9D104_104856606..6992 [+], 387membrane proteinTraA_F, T4SS component 
10D104_104907170..8003 [+], 834hypothetical protein
11D104_104957996..8697 [+], 702hypothetical protein
12D104_105008762..9169 [-], 408MerR family transcriptional regulator
13D104_105059311..10195 [+], 885sodium:proton antiporter
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Ryan MP; Armshaw P; O'Halloran JA; Pembroke JT (2017). Analysis and comparative genomics of R997, the first SXT/R391 integrative and conjugative element (ICE) of the Indian Sub-Continent. Sci Rep. 7(1):8562. [PudMed:28819148]
(2) Badhai J; Das SK (2016). Characterization of Three Novel SXT/R391 Integrating Conjugative Elements ICEMfuInd1a and ICEMfuInd1b, and ICEMprChn1 Identified in the Genomes of Marinomonas fungiae JCM 18476(T) and Marinomonas profundimaris Strain D104. Front Microbiol. 1.608333333. [PudMed:27933056] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature